U.S. Department of Health and Human Services — National Institutes of Health

Thrombin-RNA aptamer complex

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Created on Tue, 2016-09-27 11:14, last updated on Tue, 2016-09-27 11:16

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General Information

This Model was autogenerated from the "Quick Submit" tool.

Model ID

3DPX-003793

Category

Proteins, Macromolecules and Viruses

Keyword(s)

Thrombin-RNA aptamer, phosphorodithioate RNA, PS2-RNA, PS2 linkage, hydrolase-RNA complex

Protein Data Bank ID

Experimental Method

X-RAY DIFFRACTION

Resolution

1.859

Model Details

Oligomeric Details

trimeric

R-Factor

0.1910

Scattering Type

x-ray

Attribution

PubMed ID

Digital Object Identifier (DOI)

10.1093/nar/gkw725

Citation Title

Evoking picomolar binding in RNA by a single phosphorodithioate linkage.

Citation Year

2016

STL/VRML Files

PDB-5DO4-ribbon-secondary.wrl

PDB-5DO4-ribbon-rainbow.wrl

PDB-5DO4-ribbon-bychain.wrl

PDB-5DO4-ribbon.stl

PDB-5DO4-surf-bychain.wrl

PDB-5DO4-surf-hydropathy.wrl

PDB-5DO4-surf-coulombic.wrl

PDB-5DO4-surf.stl

X3D Files

PDB-5DO4-ribbon-secondary.x3d

PDB-5DO4-ribbon-rainbow.x3d

PDB-5DO4-ribbon-bychain.x3d

PDB-5DO4-ribbon.x3d

PDB-5DO4-surf-bychain.x3d

PDB-5DO4-surf-hydropathy.x3d

PDB-5DO4-surf-coulombic.x3d

PDB-5DO4-surf.x3d

Blender Files

PDB-5DO4-ribbon-secondary.blend

PDB-5DO4-ribbon-rainbow.blend

PDB-5DO4-ribbon-bychain.blend

PDB-5DO4-ribbon.blend

PDB-5DO4-surf-bychain.blend

PDB-5DO4-surf-hydropathy.blend

PDB-5DO4-surf-coulombic.blend

PDB-5DO4-surf.blend

PDB-5DO4-ribbon-secondary.x3d

PDB-5DO4-ribbon-rainbow.x3d

PDB-5DO4-ribbon-bychain.x3d

PDB-5DO4-ribbon.x3d

PDB-5DO4-surf-bychain.x3d

PDB-5DO4-surf-hydropathy.x3d

PDB-5DO4-surf-coulombic.x3d

PDB-5DO4-surf.x3d

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